An optimized kit-free method for making strand-specific deep sequencing libraries from RNA fragments

بواسطة Heyer, Erin E., Ozadam, Hakan, Ricci, Emiliano P., Cenik, Can, Moore, Melissa J.
الحاوية / القاعدة Nucleic Acids Res (2015)

REBASE—a database for DNA restriction and modification: enzymes, genes and genomes

بواسطة Roberts, Richard J., Vincze, Tamas, Posfai, Janos, Macelis, Dana
الحاوية / القاعدة Nucleic Acids Res (2014)

SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updates

بواسطة Pachkov, Mikhail, Balwierz, Piotr J., Arnold, Phil, Ozonov, Evgeniy, van Nimwegen, Erik
منشور في 2013

A 10S galectin-3–U1 snRNP complex assembles into active spliceosomes

بواسطة Haudek, Kevin C., Voss, Patricia G., Wang, John L., Patterson, Ronald J.
الحاوية / القاعدة Nucleic Acids Res (2016)

Recent improvements to Binding MOAD: a resource for protein–ligand binding affinities and structures

بواسطة Ahmed, Aqeel, Smith, Richard D., Clark, Jordan J., Dunbar, James B., Carlson, Heather A.
الحاوية / القاعدة Nucleic Acids Res (2014)

Characterization of a coupled DNA replication and translesion synthesis polymerase supraholoenzyme from archaea

بواسطة Cranford, Matthew T., Chu, Aurea M., Baguley, Joshua K., Bauer, Robert J., Trakselis, Michael A.
الحاوية / القاعدة Nucleic Acids Res (2017)

BAGEL3: automated identification of genes encoding bacteriocins and (non-)bactericidal posttranslationally modified peptides

بواسطة van Heel, Auke J., de Jong, Anne, Montalbán-López, Manuel, Kok, Jan, Kuipers, Oscar P.
منشور في 2013

TDR Targets 6: driving drug discovery for human pathogens through intensive chemogenomic data integration

بواسطة Urán Landaburu, Lionel, Berenstein, Ariel J, Videla, Santiago, Maru, Parag, Shanmugam, Dhanasekaran, Chernomoretz, Ariel, Agüero, Fernán
الحاوية / القاعدة Nucleic Acids Res (2020)

A novel role for CARM1 in promoting nonsense-mediated mRNA decay: potential implications for spinal muscular atrophy

بواسطة Sanchez, Gabriel, Bondy-Chorney, Emma, Laframboise, Janik, Paris, Geneviève, Didillon, Andréanne, Jasmin, Bernard J., Côté, Jocelyn
الحاوية / القاعدة Nucleic Acids Res (2016)

Minimotif Miner 4: a million peptide minimotifs and counting

بواسطة Lyon, Kenneth F, Cai, Xingyu, Young, Richard J, Mamun, Abdullah-Al, Rajasekaran, Sanguthevar, Schiller, Martin R
الحاوية / القاعدة Nucleic Acids Res (2018)

INTERFEROME v2.0: an updated database of annotated interferon-regulated genes

بواسطة Rusinova, Irina, Forster, Sam, Yu, Simon, Kannan, Anitha, Masse, Marion, Cumming, Helen, Chapman, Ross, Hertzog, Paul J.
منشور في 2013

FireDB: a compendium of biological and pharmacologically relevant ligands

بواسطة Maietta, Paolo, Lopez, Gonzalo, Carro, Angel, Pingilley, Benjamin J., Leon, Leticia G., Valencia, Alfonso, Tress, Michael L.
منشور في 2014

BAGEL4: a user-friendly web server to thoroughly mine RiPPs and bacteriocins

بواسطة van Heel, Auke J, de Jong, Anne, Song, Chunxu, Viel, Jakob H, Kok, Jan, Kuipers, Oscar P
الحاوية / القاعدة Nucleic Acids Res (2018)

GWIPS-viz: 2018 update

بواسطة Michel, Audrey M, Kiniry, Stephen J, O’Connor, Patrick B F, Mullan, James P, Baranov, Pavel V
الحاوية / القاعدة Nucleic Acids Res (2018)

STITCH 4: integration of protein–chemical interactions with user data

بواسطة Kuhn, Michael, Szklarczyk, Damian, Pletscher-Frankild, Sune, Blicher, Thomas H., von Mering, Christian, Jensen, Lars J., Bork, Peer
منشور في 2014

Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database

بواسطة Fortriede, Joshua D, Pells, Troy J, Chu, Stanley, Chaturvedi, Praneet, Wang, DongZhuo, Fisher, Malcom E, James-Zorn, Christina, Wang, Ying, Nenni, Mardi J, Burns, Kevin A, Lotay, Vaneet S, Ponferrada, Virgilio G, Karimi, Kamran, Zorn, Aaron M, Vize, Peter D
الحاوية / القاعدة Nucleic Acids Res (2020)

Transcription blockage by homopurine DNA sequences: role of sequence composition and single-strand breaks

بواسطة Belotserkovskii, Boris P., Neil, Alexander J., Saleh, Syed Shayon, Shin, Jane Hae Soo, Mirkin, Sergei M., Hanawalt, Philip C.
منشور في 2013

BacMap: an up-to-date electronic atlas of annotated bacterial genomes

بواسطة Cruz, Joseph, Liu, Yifeng, Liang, Yongjie, Zhou, You, Wilson, Michael, Dennis, Jonathan J., Stothard, Paul, Van Domselaar, Gary, Wishart, David S.
منشور في 2012

The Encyclopedia of DNA elements (ENCODE): data portal update

بواسطة Davis, Carrie A, Hitz, Benjamin C, Sloan, Cricket A, Chan, Esther T, Davidson, Jean M, Gabdank, Idan, Hilton, Jason A, Jain, Kriti, Baymuradov, Ulugbek K, Narayanan, Aditi K, Onate, Kathrina C, Graham, Keenan, Miyasato, Stuart R, Dreszer, Timothy R, Strattan, J Seth, Jolanki, Otto, Tanaka, Forrest Y, Cherry, J Michael
الحاوية / القاعدة Nucleic Acids Res (2018)

FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations

بواسطة dos Santos, Gilberto, Schroeder, Andrew J., Goodman, Joshua L., Strelets, Victor B., Crosby, Madeline A., Thurmond, Jim, Emmert, David B., Gelbart, William M.
الحاوية / القاعدة Nucleic Acids Res (2014)