Buffering updates enables efficient dynamic de Bruijn graphs

MOTIVATION: The de Bruijn graph has become a ubiquitous graph model for biological data ever since its initial introduction in the late 1990s. It has been used for a variety of purposes including genome assembly (Zerbino and Birney, 2008; Bankevich et al., 2012; Peng et al., 2012), variant detection...

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Bibliografiske detaljer
Udgivet i:Comput Struct Biotechnol J
Main Authors: Alanko, Jarno, Alipanahi, Bahar, Settle, Jonathen, Boucher, Christina, Gagie, Travis
Format: Artigo
Sprog:Inglês
Udgivet: Research Network of Computational and Structural Biotechnology 2021
Fag:
Research Article
Online adgang:https://ncbi.nlm.nih.gov/pmc/articles/PMC8326735/
https://ncbi.nlm.nih.gov/pubmed/34377371
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1016/j.csbj.2021.06.047
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