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Mi3-GPU: MCMC-based Inverse Ising Inference on GPUs for protein covariation analysis

Inverse Ising inference is a method for inferring the coupling parameters of a Potts/Ising model based on observed site-covariation, which has found important applications in protein physics for detecting interactions between residues in protein families. We introduce Mi3-GPU (“mee-three”, for MCMC...

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Publicado en:Comput Phys Commun
Autores principales: Haldane, Allan, Levy, Ronald M.
Formato: Artigo
Lenguaje:Inglês
Publicado: 2020
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Acceso en línea:https://ncbi.nlm.nih.gov/pmc/articles/PMC7944406/
https://ncbi.nlm.nih.gov/pubmed/33716309
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1016/j.cpc.2020.107312
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