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souporcell: Robust clustering of single cell RNAseq by genotype without reference genotypes

Methods to deconvolve single-cell RNA sequencing data are necessary for samples containing a mixture of genotypes whether natural or experimentally combined. Multiplexing across donors is a popular experimental design which can avoid batch effects, reduce costs, and improve doublet detection. Using...

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Publicat a:Nat Methods
Autors principals: Heaton, Haynes, Talman, Arthur M., Knights, Andrew, Imaz, Maria, Gaffney, Daniel, Durbin, Richard, Hemberg, Martin, Lawniczak, Mara
Format: Artigo
Idioma:Inglês
Publicat: 2020
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Accés en línia:https://ncbi.nlm.nih.gov/pmc/articles/PMC7617080/
https://ncbi.nlm.nih.gov/pubmed/32366989
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1038/s41592-020-0820-1
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