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Binning unassembled short reads based on k-mer abundance covariance using sparse coding

BACKGROUND: Sequence-binning techniques enable the recovery of an increasing number of genomes from complex microbial metagenomes and typically require prior metagenome assembly, incurring the computational cost and drawbacks of the latter, e.g., biases against low-abundance genomes and inability to...

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Bibliografski detalji
Izdano u:Gigascience
Glavni autori: Kyrgyzov, Olexiy, Prost, Vincent, Gazut, Stéphane, Farcy, Bruno, Brüls, Thomas
Format: Artigo
Jezik:Inglês
Izdano: Oxford University Press 2020
Teme:
Online pristup:https://ncbi.nlm.nih.gov/pmc/articles/PMC7099633/
https://ncbi.nlm.nih.gov/pubmed/32219339
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/gigascience/giaa028
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