Whole genome sequencing and metagenomics for outbreak investigation, source attribution and risk assessment of food‐borne microorganisms

This Opinion considers the application of whole genome sequencing (WGS) and metagenomics for outbreak investigation, source attribution and risk assessment of food‐borne pathogens. WGS offers the highest level of bacterial strain discrimination for food‐borne outbreak investigation and source‐attrib...

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Bibliografiske detaljer
Udgivet i:EFSA J
Main Authors: Koutsoumanis, Kostas, Allende, Ana, Alvarez‐Ordóñez, Avelino, Bolton, Declan, Bover‐Cid, Sara, Chemaly, Marianne, Davies, Robert, De Cesare, Alessandra, Hilbert, Friederike, Lindqvist, Roland, Nauta, Maarten, Peixe, Luisa, Ru, Giuseppe, Simmons, Marion, Skandamis, Panagiotis, Suffredini, Elisabetta, Jenkins, Claire, Malorny, Burkhard, Ribeiro Duarte, Ana Sofia, Torpdahl, Mia, da Silva Felício, Maria Teresa, Guerra, Beatriz, Rossi, Mirko, Herman, Lieve
Format: Artigo
Sprog:Inglês
Udgivet: John Wiley and Sons Inc. 2019
Fag:
Scientific Opinion
Online adgang:https://ncbi.nlm.nih.gov/pmc/articles/PMC7008917/
https://ncbi.nlm.nih.gov/pubmed/32626197
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.2903/j.efsa.2019.5898
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