Whole genome sequencing and metagenomics for outbreak investigation, source attribution and risk assessment of food‐borne microorganisms

This Opinion considers the application of whole genome sequencing (WGS) and metagenomics for outbreak investigation, source attribution and risk assessment of food‐borne pathogens. WGS offers the highest level of bacterial strain discrimination for food‐borne outbreak investigation and source‐attrib...

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Veröffentlicht in:EFSA J
Hauptverfasser: Koutsoumanis, Kostas, Allende, Ana, Alvarez‐Ordóñez, Avelino, Bolton, Declan, Bover‐Cid, Sara, Chemaly, Marianne, Davies, Robert, De Cesare, Alessandra, Hilbert, Friederike, Lindqvist, Roland, Nauta, Maarten, Peixe, Luisa, Ru, Giuseppe, Simmons, Marion, Skandamis, Panagiotis, Suffredini, Elisabetta, Jenkins, Claire, Malorny, Burkhard, Ribeiro Duarte, Ana Sofia, Torpdahl, Mia, da Silva Felício, Maria Teresa, Guerra, Beatriz, Rossi, Mirko, Herman, Lieve
Format: Artigo
Sprache:Inglês
Veröffentlicht: John Wiley and Sons Inc. 2019
Schlagworte:
Scientific Opinion
Online Zugang:https://ncbi.nlm.nih.gov/pmc/articles/PMC7008917/
https://ncbi.nlm.nih.gov/pubmed/32626197
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.2903/j.efsa.2019.5898
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