A generic workflow for Single Locus Sequence Typing (SLST) design and subspecies characterization of microbiota

We present TaxPhlAn, a new method and bioinformatics pipeline for design and analysis of single-locus sequence typing (SLST) markers to type and profile bacteria beyond the species-level in a complex microbial community background. TaxPhlAn can be applied to any group of phylogenetically-related bac...

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Detalhes bibliográficos
Publicado no:Sci Rep
Main Authors: Ederveen, Thomas H. A., Smits, Jos P. H., Hajo, Karima, van Schalkwijk, Saskia, Kouwenhoven, Tessa A., Lukovac, Sabina, Wels, Michiel, van den Bogaard, Ellen H., Schalkwijk, Joost, Boekhorst, Jos, Zeeuwen, Patrick L. J. M., van Hijum, Sacha A. F. T.
Formato: Artigo
Idioma:Inglês
Publicado em: Nature Publishing Group UK 2019
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Article
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC6934516/
https://ncbi.nlm.nih.gov/pubmed/31882601
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1038/s41598-019-56065-y
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