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Dynamical ensemble of the active state and transition state mimic for the RNA-cleaving 8–17 DNAzyme in solution

We perform molecular dynamics simulations, based on recent crystallographic data, on the 8–17 DNAzyme at four states along the reaction pathway to determine the dynamical ensemble for the active state and transition state mimic in solution. A striking finding is the diverse roles played by Na(+) and...

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Detalhes bibliográficos
Publicado no:Nucleic Acids Res
Main Authors: Ekesan, Şölen, York, Darrin M
Formato: Artigo
Idioma:Inglês
Publicado em: Oxford University Press 2019
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC6821293/
https://ncbi.nlm.nih.gov/pubmed/31511899
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/nar/gkz773
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