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Dynamical ensemble of the active state and transition state mimic for the RNA-cleaving 8–17 DNAzyme in solution

We perform molecular dynamics simulations, based on recent crystallographic data, on the 8–17 DNAzyme at four states along the reaction pathway to determine the dynamical ensemble for the active state and transition state mimic in solution. A striking finding is the diverse roles played by Na(+) and...

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Pubblicato in:Nucleic Acids Res
Autori principali: Ekesan, Şölen, York, Darrin M
Natura: Artigo
Lingua:Inglês
Pubblicazione: Oxford University Press 2019
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Accesso online:https://ncbi.nlm.nih.gov/pmc/articles/PMC6821293/
https://ncbi.nlm.nih.gov/pubmed/31511899
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/nar/gkz773
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