ShaKer: RNA SHAPE prediction using graph kernel

SUMMARY: SHAPE experiments are used to probe the structure of RNA molecules. We present ShaKer to predict SHAPE data for RNA using a graph-kernel-based machine learning approach that is trained on experimental SHAPE information. While other available methods require a manually curated reference stru...

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Shranjeno v:
Bibliografske podrobnosti
izdano v:Bioinformatics
Main Authors: Mautner, Stefan, Montaseri, Soheila, Miladi, Milad, Raden, Martin, Costa, Fabrizio, Backofen, Rolf
Format: Artigo
Jezik:Inglês
Izdano: Oxford University Press 2019
Teme:
Ismb/Eccb 2019 Conference Proceedings
Online dostop:https://ncbi.nlm.nih.gov/pmc/articles/PMC6612843/
https://ncbi.nlm.nih.gov/pubmed/31510707
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btz395
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