Phylogenomic Pipeline Validation for Foodborne Pathogen Disease Surveillance

Foodborne pathogen surveillance in the United States is transitioning from strain identification using restriction digest technology (pulsed-field gel electrophoresis [PFGE]) to shotgun sequencing of the entire genome (whole-genome sequencing [WGS]). WGS requires a new suite of analysis tools, some...

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Bibliografiske detaljer
Udgivet i:J Clin Microbiol
Main Authors: Timme, Ruth E., Strain, Errol, Baugher, Joseph D., Davis, Steven, Gonzalez-Escalona, Narjol, Sanchez Leon, Maria, Allard, Marc W., Brown, Eric W., Tallent, Sandra, Rand, Hugh
Format: Artigo
Sprog:Inglês
Udgivet: American Society for Microbiology 2019
Fag:
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Online adgang:https://ncbi.nlm.nih.gov/pmc/articles/PMC6498022/
https://ncbi.nlm.nih.gov/pubmed/30728194
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1128/JCM.01816-18
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