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Alevin efficiently estimates accurate gene abundances from dscRNA-seq data
We introduce alevin, a fast end-to-end pipeline to process droplet-based single-cell RNA sequencing data, performing cell barcode detection, read mapping, unique molecular identifier (UMI) deduplication, gene count estimation, and cell barcode whitelisting. Alevin’s approach to UMI deduplication con...
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| Udgivet i: | Genome Biol |
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| Main Authors: | , , , , |
| Format: | Artigo |
| Sprog: | Inglês |
| Udgivet: |
BioMed Central
2019
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| Fag: | |
| Online adgang: | https://ncbi.nlm.nih.gov/pmc/articles/PMC6437997/ https://ncbi.nlm.nih.gov/pubmed/30917859 https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s13059-019-1670-y |
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