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Improving Prediction Accuracy of Binding Free Energies and Poses of HIV Integrase Complexes Using the Binding Energy Distribution Analysis Method with Flattening Potentials

To accelerate conformation sampling of slow dynamics from receptor or ligand, we introduced flattening potentials on selected bonded and nonbonded intramolec-ular interactions to the binding energy distribution analysis method (BEDAM) for calculating absolute binding free energies of protein-ligand...

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Bibliographic Details
Published in:J Chem Inf Model
Main Authors: Xia, Junchao, Flynn, William, Levy, Ronald M.
Format: Artigo
Language:Inglês
Published: 2018
Subjects:
Online Access:https://ncbi.nlm.nih.gov/pmc/articles/PMC6287956/
https://ncbi.nlm.nih.gov/pubmed/29927237
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1021/acs.jcim.8b00194
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