deBGR: an efficient and near-exact representation of the weighted de Bruijn graph

MOTIVATION: Almost all de novo short-read genome and transcriptome assemblers start by building a representation of the de Bruijn Graph of the reads they are given as input. Even when other approaches are used for subsequent assembly (e.g. when one is using ‘long read’ technologies like those offere...

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Vydáno v:Bioinformatics
Hlavní autoři: Pandey, Prashant, Bender, Michael A, Johnson, Rob, Patro, Rob
Médium: Artigo
Jazyk:Inglês
Vydáno: Oxford University Press 2017
Témata:
Ismb/Eccb 2017: The 25th Annual Conference Intelligent Systems for Molecular Biology Held Jointly with the 16th Annual European Conference on Computational Biology, Prague, Czech Republic, July 21–25, 2017
On-line přístup:https://ncbi.nlm.nih.gov/pmc/articles/PMC5870571/
https://ncbi.nlm.nih.gov/pubmed/28881995
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btx261
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