deBGR: an efficient and near-exact representation of the weighted de Bruijn graph

MOTIVATION: Almost all de novo short-read genome and transcriptome assemblers start by building a representation of the de Bruijn Graph of the reads they are given as input. Even when other approaches are used for subsequent assembly (e.g. when one is using ‘long read’ technologies like those offere...

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Publicat a:Bioinformatics
Autors principals: Pandey, Prashant, Bender, Michael A, Johnson, Rob, Patro, Rob
Format: Artigo
Idioma:Inglês
Publicat: Oxford University Press 2017
Matèries:
Ismb/Eccb 2017: The 25th Annual Conference Intelligent Systems for Molecular Biology Held Jointly with the 16th Annual European Conference on Computational Biology, Prague, Czech Republic, July 21–25, 2017
Accés en línia:https://ncbi.nlm.nih.gov/pmc/articles/PMC5870571/
https://ncbi.nlm.nih.gov/pubmed/28881995
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btx261
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