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Automated generation of heuristics for biological sequence comparison

BACKGROUND: Exhaustive methods of sequence alignment are accurate but slow, whereas heuristic approaches run quickly, but their complexity makes them more difficult to implement. We introduce bounded sparse dynamic programming (BSDP) to allow rapid approximation to exhaustive alignment. This is used...

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Bibliografische gegevens
Gepubliceerd in:BMC Bioinformatics
Hoofdauteurs: Slater, Guy St C, Birney, Ewan
Formaat: Artigo
Taal:Inglês
Gepubliceerd in: BMC 2005
Onderwerpen:
Online toegang:https://ncbi.nlm.nih.govhttps://pmc.ncbi.nlm.nih.gov/articles/PMC553969/
https://ncbi.nlm.nih.govhttps://pubmed.ncbi.nlm.nih.gov/15713233/
https://ncbi.nlm.nih.govhttps://doi.org/10.1186/1471-2105-6-31
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