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Automated generation of heuristics for biological sequence comparison

BACKGROUND: Exhaustive methods of sequence alignment are accurate but slow, whereas heuristic approaches run quickly, but their complexity makes them more difficult to implement. We introduce bounded sparse dynamic programming (BSDP) to allow rapid approximation to exhaustive alignment. This is used...

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Publicat a:BMC Bioinformatics
Autors principals: Slater, Guy St C, Birney, Ewan
Format: Artigo
Idioma:Inglês
Publicat: BMC 2005
Matèries:
Accés en línia:https://ncbi.nlm.nih.govhttps://pmc.ncbi.nlm.nih.gov/articles/PMC553969/
https://ncbi.nlm.nih.govhttps://pubmed.ncbi.nlm.nih.gov/15713233/
https://ncbi.nlm.nih.govhttps://doi.org/10.1186/1471-2105-6-31
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