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Predicting conformational ensembles and genome-wide transcription factor binding sites from DNA sequences

DNA shape is emerging as an important determinant of transcription factor binding beyond just the DNA sequence. The only tool for large scale DNA shape estimates, DNAshape was derived from Monte-Carlo simulations and predicts four broad and static DNA shape features, Propeller twist, Helical twist,...

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Detalhes bibliográficos
Publicado no:Sci Rep
Main Authors: Andrabi, Munazah, Hutchins, Andrew Paul, Miranda-Saavedra, Diego, Kono, Hidetoshi, Nussinov, Ruth, Mizuguchi, Kenji, Ahmad, Shandar
Formato: Artigo
Idioma:Inglês
Publicado em: Nature Publishing Group UK 2017
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC5481346/
https://ncbi.nlm.nih.gov/pubmed/28642456
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1038/s41598-017-03199-6
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