StrainSeeker: fast identification of bacterial strains from raw sequencing reads using user-provided guide trees

BACKGROUND: Fast, accurate and high-throughput identification of bacterial isolates is in great demand. The present work was conducted to investigate the possibility of identifying isolates from unassembled next-generation sequencing reads using custom-made guide trees. RESULTS: A tool named StrainS...

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Sparad:
Bibliografiska uppgifter
I publikationen:PeerJ
Huvudupphovsmän: Roosaare, Märt, Vaher, Mihkel, Kaplinski, Lauris, Möls, Märt, Andreson, Reidar, Lepamets, Maarja, Kõressaar, Triinu, Naaber, Paul, Kõljalg, Siiri, Remm, Maido
Materialtyp: Artigo
Språk:Inglês
Publicerad: PeerJ Inc. 2017
Ämnen:
Bioinformatics
Länkar:https://ncbi.nlm.nih.gov/pmc/articles/PMC5438578/
https://ncbi.nlm.nih.gov/pubmed/28533988
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.7717/peerj.3353
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