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Training alignment parameters for arbitrary sequencers with LAST-TRAIN

SUMMARY: LAST-TRAIN improves sequence alignment accuracy by inferring substitution and gap scores that fit the frequencies of substitutions, insertions, and deletions in a given dataset. We have applied it to mapping DNA reads from IonTorrent and PacBio RS, and we show that it reduces reference bias...

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Bibliographic Details
Published in:Bioinformatics
Main Authors: Hamada, Michiaki, Ono, Yukiteru, Asai, Kiyoshi, Frith, Martin C
Format: Artigo
Language:Inglês
Published: Oxford University Press 2017
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Online Access:https://ncbi.nlm.nih.gov/pmc/articles/PMC5351549/
https://ncbi.nlm.nih.gov/pubmed/28039163
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btw742
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