Rice SNP-seek database update: new SNPs, indels, and queries

We describe updates to the Rice SNP-Seek Database since its first release. We ran a new SNP-calling pipeline followed by filtering that resulted in complete, base, filtered and core SNP datasets. Besides the Nipponbare reference genome, the pipeline was run on genome assemblies of IR 64, 93-11, DJ 1...

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Bibliographic Details
Published in:Nucleic Acids Res
Main Authors: Mansueto, Locedie, Fuentes, Roven Rommel, Borja, Frances Nikki, Detras, Jeffery, Abriol-Santos, Juan Miguel, Chebotarov, Dmytro, Sanciangco, Millicent, Palis, Kevin, Copetti, Dario, Poliakov, Alexandre, Dubchak, Inna, Solovyev, Victor, Wing, Rod A., Hamilton, Ruaraidh Sackville, Mauleon, Ramil, McNally, Kenneth L., Alexandrov, Nickolai
Format: Artigo
Language:Inglês
Published: Oxford University Press 2017
Subjects:
Database Issue
Online Access:https://ncbi.nlm.nih.gov/pmc/articles/PMC5210592/
https://ncbi.nlm.nih.gov/pubmed/27899667
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/nar/gkw1135
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