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RNA sequence context effects measured in vitro predict in vivo protein binding and regulation

Many RNA binding proteins (RBPs) bind specific RNA sequence motifs, but only a small fraction (~15-40%) of RBP motif occurrences are occupied in vivo. To determine what contextual features discriminate between bound and unbound motifs, we performed an in vitro binding assay using 12,000 mouse RNA se...

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Detalhes bibliográficos
Publicado no:Mol Cell
Main Authors: Taliaferro, J. Matthew, Lambert, Nicole J., Sudmant, Peter H., Dominguez, Daniel, Merkin, Jason J., Alexis, Maria S., Bazile, Cassandra, Burge, Christopher B.
Formato: Artigo
Idioma:Inglês
Publicado em: 2016
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Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC5107313/
https://ncbi.nlm.nih.gov/pubmed/27720642
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1016/j.molcel.2016.08.035
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