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Fast genotyping of known SNPs through approximate k-mer matching

Motivation: As the volume of next-generation sequencing (NGS) data increases, faster algorithms become necessary. Although speeding up individual components of a sequence analysis pipeline (e.g. read mapping) can reduce the computational cost of analysis, such approaches do not take full advantage o...

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Vydáno v:Bioinformatics
Hlavní autoři: Shajii, Ariya, Yorukoglu, Deniz, William Yu, Yun, Berger, Bonnie
Médium: Artigo
Jazyk:Inglês
Vydáno: Oxford University Press 2016
Témata:
On-line přístup:https://ncbi.nlm.nih.gov/pmc/articles/PMC5013917/
https://ncbi.nlm.nih.gov/pubmed/27587672
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btw460
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