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phRAIDER: Pattern-Hunter based Rapid Ab Initio Detection of Elementary Repeats

Motivation: Transposable elements (TEs) and repetitive DNA make up a sizable fraction of Eukaryotic genomes, and their annotation is crucial to the study of the structure, organization, and evolution of any newly sequenced genome. Although RepeatMasker and nHMMER are useful for identifying these rep...

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Detalhes bibliográficos
Publicado no:Bioinformatics
Main Authors: Schaeffer, Carly E., Figueroa, Nathaniel D., Liu, Xiaolin, Karro, John E.
Formato: Artigo
Idioma:Inglês
Publicado em: Oxford University Press 2016
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC4908342/
https://ncbi.nlm.nih.gov/pubmed/27307619
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btw258
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