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phRAIDER: Pattern-Hunter based Rapid Ab Initio Detection of Elementary Repeats

Motivation: Transposable elements (TEs) and repetitive DNA make up a sizable fraction of Eukaryotic genomes, and their annotation is crucial to the study of the structure, organization, and evolution of any newly sequenced genome. Although RepeatMasker and nHMMER are useful for identifying these rep...

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Bibliografske podrobnosti
izdano v:Bioinformatics
Main Authors: Schaeffer, Carly E., Figueroa, Nathaniel D., Liu, Xiaolin, Karro, John E.
Format: Artigo
Jezik:Inglês
Izdano: Oxford University Press 2016
Teme:
Online dostop:https://ncbi.nlm.nih.gov/pmc/articles/PMC4908342/
https://ncbi.nlm.nih.gov/pubmed/27307619
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btw258
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