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phRAIDER: Pattern-Hunter based Rapid Ab Initio Detection of Elementary Repeats

Motivation: Transposable elements (TEs) and repetitive DNA make up a sizable fraction of Eukaryotic genomes, and their annotation is crucial to the study of the structure, organization, and evolution of any newly sequenced genome. Although RepeatMasker and nHMMER are useful for identifying these rep...

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Publicat a:Bioinformatics
Autors principals: Schaeffer, Carly E., Figueroa, Nathaniel D., Liu, Xiaolin, Karro, John E.
Format: Artigo
Idioma:Inglês
Publicat: Oxford University Press 2016
Matèries:
Accés en línia:https://ncbi.nlm.nih.gov/pmc/articles/PMC4908342/
https://ncbi.nlm.nih.gov/pubmed/27307619
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btw258
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