Taxonomer: an interactive metagenomics analysis portal for universal pathogen detection and host mRNA expression profiling

BACKGROUND: High-throughput sequencing enables unbiased profiling of microbial communities, universal pathogen detection, and host response to infectious diseases. However, computation times and algorithmic inaccuracies have hindered adoption. RESULTS: We present Taxonomer, an ultrafast, web-tool fo...

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Publié dans:Genome Biol
Auteurs principaux: Flygare, Steven, Simmon, Keith, Miller, Chase, Qiao, Yi, Kennedy, Brett, Di Sera, Tonya, Graf, Erin H., Tardif, Keith D., Kapusta, Aurélie, Rynearson, Shawn, Stockmann, Chris, Queen, Krista, Tong, Suxiang, Voelkerding, Karl V., Blaschke, Anne, Byington, Carrie L., Jain, Seema, Pavia, Andrew, Ampofo, Krow, Eilbeck, Karen, Marth, Gabor, Yandell, Mark, Schlaberg, Robert
Format: Artigo
Langue:Inglês
Publié: BioMed Central 2016
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Software
Accès en ligne:https://ncbi.nlm.nih.gov/pmc/articles/PMC4880956/
https://ncbi.nlm.nih.gov/pubmed/27224977
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s13059-016-0969-1
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