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GENESIS: a hybrid-parallel and multi-scale molecular dynamics simulator with enhanced sampling algorithms for biomolecular and cellular simulations

GENESIS (Generalized-Ensemble Simulation System) is a new software package for molecular dynamics (MD) simulations of macromolecules. It has two MD simulators, called ATDYN and SPDYN. ATDYN is parallelized based on an atomic decomposition algorithm for the simulations of all-atom force-field models...

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Bibliografiske detaljer
Udgivet i:Wiley Interdiscip Rev Comput Mol Sci
Main Authors: Jung, Jaewoon, Mori, Takaharu, Kobayashi, Chigusa, Matsunaga, Yasuhiro, Yoda, Takao, Feig, Michael, Sugita, Yuji
Format: Artigo
Sprog:Inglês
Udgivet: Wiley Periodicals, Inc. 2015
Fag:
Online adgang:https://ncbi.nlm.nih.gov/pmc/articles/PMC4696414/
https://ncbi.nlm.nih.gov/pubmed/26753008
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1002/wcms.1220
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