Extended Phase-Space Methods for Enhanced Sampling in Molecular Simulations: A Review

Por Fujisaki, Hiroshi, Moritsugu, Kei, Matsunaga, Yasuhiro, Morishita, Tetsuya, Maragliano, Luca
Publicado no Front Bioeng Biotechnol (2015)

Minimum Free Energy Path of Ligand-Induced Transition in Adenylate Kinase

Por Matsunaga, Yasuhiro, Fujisaki, Hiroshi, Terada, Tohru, Furuta, Tadaomi, Moritsugu, Kei, Kidera, Akinori
Publicado em 2012

Influence of Structural Symmetry on Protein Dynamics

Por Matsunaga, Yasuhiro, Koike, Ryotaro, Ota, Motonori, Tame, Jeremy R. H., Kidera, Akinori
Publicado em 2012

GENESIS: a hybrid-parallel and multi-scale molecular dynamics simulator with enhanced sampling algorithms for biomolecular and cellular simulations

Por Jung, Jaewoon, Mori, Takaharu, Kobayashi, Chigusa, Matsunaga, Yasuhiro, Yoda, Takao, Feig, Michael, Sugita, Yuji
Publicado no Wiley Interdiscip Rev Comput Mol Sci (2015)

Topographical complexity of multidimensional energy landscapes

Por Rylance, Gareth J., Johnston, Roy L., Matsunaga, Yasuhiro, Li, Chun-Biu, Baba, Akinori, Komatsuzaki, Tamiki
Publicado em 2006