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A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs
BACKGROUND: The problem of enumerating bubbles with length constraints in directed graphs arises in transcriptomics where the question is to identify all alternative splicing events present in a sample of mRNAs sequenced by RNA-seq. RESULTS: We present a new algorithm for enumerating bubbles with le...
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| Udgivet i: | Algorithms Mol Biol |
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| Main Authors: | , , |
| Format: | Artigo |
| Sprog: | Inglês |
| Udgivet: |
BioMed Central
2015
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| Fag: | |
| Online adgang: | https://ncbi.nlm.nih.gov/pmc/articles/PMC4483228/ https://ncbi.nlm.nih.gov/pubmed/26120359 https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s13015-015-0046-4 |
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