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Effective alignment of RNA pseudoknot structures using partition function posterior log-odds scores

BACKGROUND: RNA pseudoknots play important roles in many biological processes. Previous methods for comparative pseudoknot analysis mainly focus on simultaneous folding and alignment of RNA sequences. Little work has been done to align two known RNA secondary structures with pseudoknots taking into...

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Vydáno v:BMC Bioinformatics
Hlavní autoři: Song, Yang, Hua, Lei, Shapiro, Bruce A, Wang, Jason TL
Médium: Artigo
Jazyk:Inglês
Vydáno: BioMed Central 2015
Témata:
On-line přístup:https://ncbi.nlm.nih.gov/pmc/articles/PMC4339682/
https://ncbi.nlm.nih.gov/pubmed/25727492
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s12859-015-0464-9
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