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Superiority of a mechanistic codon substitution model even for protein sequences in Phylogenetic analysis

BACKGROUND: Nucleotide and amino acid substitution tendencies are characteristic of each species, organelle, and protein family. Hence, various empirical amino acid substitution rate matrices have needed to be estimated for phylogenetic analysis: JTT, WAG, and LG for nuclear proteins, mtREV for mito...

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Vydáno v:BMC Evol Biol
Hlavní autor: Miyazawa, Sanzo
Médium: Artigo
Jazyk:Inglês
Vydáno: BioMed Central 2013
Témata:
On-line přístup:https://ncbi.nlm.nih.gov/pmc/articles/PMC4225520/
https://ncbi.nlm.nih.gov/pubmed/24256155
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/1471-2148-13-257
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