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Constant pH Replica Exchange Molecular Dynamics in Explicit Solvent Using Discrete Protonation States: Implementation, Testing, and Validation
[Image: see text] By utilizing Graphics Processing Units, we show that constant pH molecular dynamics simulations (CpHMD) run in Generalized Born (GB) implicit solvent for long time scales can yield poor pK(a) predictions as a result of sampling unrealistic conformations. To address this shortcoming...
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| Main Authors: | , , |
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| Format: | Artigo |
| Jezik: | Inglês |
| Izdano: |
American
Chemical Society
2014
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| Online dostop: | https://ncbi.nlm.nih.gov/pmc/articles/PMC3985686/ https://ncbi.nlm.nih.gov/pubmed/24803862 https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1021/ct401042b |
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