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Constant pH replica exchange molecular dynamics in biomolecules using a discrete protonation model

A constant pH replica exchange molecular dynamics (REMD) method is proposed and implemented to improve coupled protonation and conformational state sampling. By mixing conformational sampling at constant pH (with discrete protonation states) with a temperature ladder, this method avoids conformation...

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Bibliografiske detaljer
Main Authors: Meng, Yilin, Roitberg, Adrian E.
Format: Artigo
Sprog:Inglês
Udgivet: 2010
Fag:
Online adgang:https://ncbi.nlm.nih.gov/pmc/articles/PMC2877402/
https://ncbi.nlm.nih.gov/pubmed/20514364
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1021/ct900676b
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