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Multicore and GPU Algorithms for Nussinov RNA Folding
We develop cache efficient, multicore, and GPU algorithms for RNA folding using Nussinov’s equations. Our cache efficient algorithm provides a speedup between 1.6 and 3.0 relative to a naive straightforward single core code. The multicore version of the cache efficient single core algorithm provides...
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| Main Authors: | , , |
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| Format: | Artigo |
| Sprog: | Inglês |
| Udgivet: |
2013
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| Fag: | |
| Online adgang: | https://ncbi.nlm.nih.gov/pmc/articles/PMC3876873/ https://ncbi.nlm.nih.gov/pubmed/24385211 https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1109/ICCABS.2013.6629204 |
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