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Pairwise Sequence Alignment for Very Long Sequences on GPUs
We develop novel single-GPU parallelizations of the Smith-Waterman algorithm for pairwise sequence alignment. Our algorithms, which are suitable for the alignment of a single pair of very long sequences, can be used to determine the alignment score as well as the actual alignment. Experimental resul...
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| Main Authors: | , , |
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| Formato: | Artigo |
| Idioma: | Inglês |
| Publicado em: |
2012
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| Assuntos: | |
| Acesso em linha: | https://ncbi.nlm.nih.gov/pmc/articles/PMC3855353/ https://ncbi.nlm.nih.gov/pubmed/24336227 https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1109/ICCABS.2012.6182641 |
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