Optimizing de novo assembly of short-read RNA-seq data for phylogenomics

BACKGROUND: RNA-seq has shown huge potential for phylogenomic inferences in non-model organisms. However, error, incompleteness, and redundant assembled transcripts for each gene in de novo assembly of short reads cause noise in analyses and a large amount of missing data in the aligned matrix. To a...

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Bibliographic Details
Main Authors: Yang, Ya, Smith, Stephen A
Format: Artigo
Language:Inglês
Published: BioMed Central 2013
Subjects:
Methodology Article
Online Access:https://ncbi.nlm.nih.gov/pmc/articles/PMC3663818/
https://ncbi.nlm.nih.gov/pubmed/23672450
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/1471-2164-14-328
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