SOAPindel: Efficient identification of indels from short paired reads

We present a new approach to indel calling that explicitly exploits that indel differences between a reference and a sequenced sample make the mapping of reads less efficient. We assign all unmapped reads with a mapped partner to their expected genomic positions and then perform extensive de novo as...

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Hauptverfasser: Li, Shengting, Li, Ruiqiang, Li, Heng, Lu, Jianliang, Li, Yingrui, Bolund, Lars, Schierup, Mikkel H., Wang, Jun
Format: Artigo
Sprache:Inglês
Veröffentlicht: Cold Spring Harbor Laboratory Press 2013
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Online Zugang:https://ncbi.nlm.nih.gov/pmc/articles/PMC3530679/
https://ncbi.nlm.nih.gov/pubmed/22972939
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1101/gr.132480.111
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