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Summarizing and correcting the GC content bias in high-throughput sequencing

GC content bias describes the dependence between fragment count (read coverage) and GC content found in Illumina sequencing data. This bias can dominate the signal of interest for analyses that focus on measuring fragment abundance within a genome, such as copy number estimation (DNA-seq). The bias...

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Bibliographic Details
Main Authors: Benjamini, Yuval, Speed, Terence P.
Format: Artigo
Language:Inglês
Published: Oxford University Press 2012
Subjects:
Online Access:https://ncbi.nlm.nih.gov/pmc/articles/PMC3378858/
https://ncbi.nlm.nih.gov/pubmed/22323520
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/nar/gks001
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