Optimizing Read Mapping to Reference Genomes to Determine Composition and Species Prevalence in Microbial Communities

The Human Microbiome Project (HMP) aims to characterize the microbial communities of 18 body sites from healthy individuals. To accomplish this, the HMP generated two types of shotgun data: reference shotgun sequences isolated from different anatomical sites on the human body and shotgun metagenomic...

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Bibliografiske detaljer
Main Authors: Martin, John, Sykes, Sean, Young, Sarah, Kota, Karthik, Sanka, Ravi, Sheth, Nihar, Orvis, Joshua, Sodergren, Erica, Wang, Zhengyuan, Weinstock, George M., Mitreva, Makedonka
Format: Artigo
Sprog:Inglês
Udgivet: Public Library of Science 2012
Fag:
Research Article
Online adgang:https://ncbi.nlm.nih.gov/pmc/articles/PMC3374613/
https://ncbi.nlm.nih.gov/pubmed/22719831
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1371/journal.pone.0036427
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