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SAMStat: monitoring biases in next generation sequencing data

Motivation: The sequence alignment/map format (SAM) is a commonly used format to store the alignments between millions of short reads and a reference genome. Often certain positions within the reads are inherently more likely to contain errors due to the protocols used to prepare the samples. Such b...

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Detalhes bibliográficos
Main Authors: Lassmann, Timo, Hayashizaki, Yoshihide, Daub, Carsten O.
Formato: Artigo
Idioma:Inglês
Publicado em: Oxford University Press 2011
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC3008642/
https://ncbi.nlm.nih.gov/pubmed/21088025
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btq614
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