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Efficient construction of an assembly string graph using the FM-index

Motivation: Sequence assembly is a difficult problem whose importance has grown again recently as the cost of sequencing has dramatically dropped. Most new sequence assembly software has started by building a de Bruijn graph, avoiding the overlap-based methods used previously because of the computat...

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Detalhes bibliográficos
Main Authors: Simpson, Jared T., Durbin, Richard
Formato: Artigo
Idioma:Inglês
Publicado em: Oxford University Press 2010
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC2881401/
https://ncbi.nlm.nih.gov/pubmed/20529929
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btq217
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