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Significant speedup of database searches with HMMs by search space reduction with PSSM family models

Motivation: Profile hidden Markov models (pHMMs) are currently the most popular modeling concept for protein families. They provide sensitive family descriptors, and sequence database searching with pHMMs has become a standard task in today's genome annotation pipelines. On the downside, search...

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Main Authors: Beckstette, Michael, Homann, Robert, Giegerich, Robert, Kurtz, Stefan
Format: Artigo
Jezik:Inglês
Izdano: Oxford University Press 2009
Teme:
Online dostop:https://ncbi.nlm.nih.gov/pmc/articles/PMC2788931/
https://ncbi.nlm.nih.gov/pubmed/19828575
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btp593
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