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Fast index based algorithms and software for matching position specific scoring matrices

BACKGROUND: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs in nucleotide as well as amino acid sequences. Searching with PSSMs in complete genomes or large sequence databases is a common, but computationally expensive task. RE...

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Main Authors: Beckstette, Michael, Homann, Robert, Giegerich, Robert, Kurtz, Stefan
Formato: Artigo
Idioma:Inglês
Publicado: BioMed Central 2006
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Acceso en liña:https://ncbi.nlm.nih.gov/pmc/articles/PMC1635428/
https://ncbi.nlm.nih.gov/pubmed/16930469
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/1471-2105-7-389
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