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Error and efficiency of replica exchange molecular dynamics simulations

We derive simple analytical expressions for the error and computational efficiency of replica exchange molecular dynamics (REMD) simulations (and by analogy replica exchange Monte Carlo simulations). The theory applies to the important case of systems whose dynamics at long times is dominated by the...

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Hlavní autoři: Rosta, Edina, Hummer, Gerhard
Médium: Artigo
Jazyk:Inglês
Vydáno: U.S. Government 2009
Témata:
On-line přístup:https://ncbi.nlm.nih.gov/pmc/articles/PMC2780465/
https://ncbi.nlm.nih.gov/pubmed/19894977
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1063/1.3249608
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