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Thermostat artifacts in replica exchange molecular dynamics simulations

We explore the effects of thermostats in replica exchange molecular dynamics (REMD) simulations. For thermostats that do not produce a canonical ensemble, REMD simulations are found to distort the configuration-space distributions. For bulk water, we find small deviations of the average potential en...

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Bibliografische gegevens
Hoofdauteurs: Rosta, Edina, Buchete, Nicolae-Viorel, Hummer, Gerhard
Formaat: Artigo
Taal:Inglês
Gepubliceerd in: 2009
Onderwerpen:
Online toegang:https://ncbi.nlm.nih.gov/pmc/articles/PMC2699284/
https://ncbi.nlm.nih.gov/pubmed/20046980
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1021/ct800557h
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