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Speeding up HMM algorithms for genetic linkage analysis via chain reductions of the state space

We develop an hidden Markov model (HMM)-based algorithm for computing exact parametric and non-parametric linkage scores in larger pedigrees than was possible before. The algorithm is applicable whenever there are chains of persons in the pedigree with no genetic measurements and with unknown affect...

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Autors principals: Geiger, Dan, Meek, Christopher, Wexler, Ydo
Format: Artigo
Idioma:Inglês
Publicat: Oxford University Press 2009
Matèries:
Accés en línia:https://ncbi.nlm.nih.gov/pmc/articles/PMC2687978/
https://ncbi.nlm.nih.gov/pubmed/19477987
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btp224
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