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Finding optimal threshold for correction error reads in DNA assembling

BACKGROUND: DNA assembling is the problem of determining the nucleotide sequence of a genome from its substrings, called reads. In the experiments, there may be some errors on the reads which affect the performance of the DNA assembly algorithms. Existing algorithms, e.g. ECINDEL and SRCorr, correct...

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Bibliographic Details
Main Authors: Chin, Francis YL, Leung, Henry CM, Li, Wei-Lin, Yiu, Siu-Ming
Format: Artigo
Language:Inglês
Published: BioMed Central 2009
Subjects:
Online Access:https://ncbi.nlm.nih.gov/pmc/articles/PMC2648749/
https://ncbi.nlm.nih.gov/pubmed/19208114
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/1471-2105-10-S1-S15
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