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Phylogenetic simulation of promoter evolution: estimation and modeling of binding site turnover events and assessment of their impact on alignment tools

BACKGROUND: The phenomenon of functional site turnover has important implications for the study of regulatory region evolution, such as for promoter sequence alignments and transcription factor binding site (TFBS) identification. At present, it remains difficult to estimate TFBS turnover rates on re...

Ausführliche Beschreibung

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Bibliographische Detailangaben
Hauptverfasser: Huang, Weichun, Nevins, Joseph R, Ohler, Uwe
Format: Artigo
Sprache:Inglês
Veröffentlicht: BioMed Central 2007
Schlagworte:
Online Zugang:https://ncbi.nlm.nih.gov/pmc/articles/PMC2246299/
https://ncbi.nlm.nih.gov/pubmed/17956628
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/gb-2007-8-10-r225
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