A molecular dynamics simulation study of oriented DNA with polyamine and sodium counterions: diffusion and averaged binding of water and cations

Four different molecular dynamics (MD) simulations have been performed for ordered DNA decamers, d(5′-ATGCAGTCAG)·d(5′-TGACTGCATC). The counterions were the two natural polyamines spermidine(3+) (Spd(3+)) and putrescine(2+) (Put(2+)), the synthetic polyamine diaminopropane(2+) (DAP(2+)) and Na(+). T...

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發表在:	Nucleic Acids Res
Principais autores:	Korolev, Nikolay, Lyubartsev, Alexander P., Laaksonen, Aatto, Nordenskiöld, Lars
格式:	Artigo
語言:	Inglês
出版:	Oxford University Press 2003
主題:	Articles
在線閱讀:	https://ncbi.nlm.nih.govhttps://pmc.ncbi.nlm.nih.gov/articles/PMC219480/ https://ncbi.nlm.nih.govhttps://pubmed.ncbi.nlm.nih.gov/14530445/ https://ncbi.nlm.nih.govhttps://doi.org/10.1093/nar/gkg802
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