A molecular dynamics simulation study of oriented DNA with polyamine and sodium counterions: diffusion and averaged binding of water and cations

Four different molecular dynamics (MD) simulations have been performed for ordered DNA decamers, d(5′-ATGCAGTCAG)·d(5′-TGACTGCATC). The counterions were the two natural polyamines spermidine(3+) (Spd(3+)) and putrescine(2+) (Put(2+)), the synthetic polyamine diaminopropane(2+) (DAP(2+)) and Na(+). T...

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Pubblicato in:	Nucleic Acids Res
Autori principali:	Korolev, Nikolay, Lyubartsev, Alexander P., Laaksonen, Aatto, Nordenskiöld, Lars
Natura:	Artigo
Lingua:	Inglês
Pubblicazione:	Oxford University Press 2003
Soggetti:	Articles
Accesso online:	https://ncbi.nlm.nih.govhttps://pmc.ncbi.nlm.nih.gov/articles/PMC219480/ https://ncbi.nlm.nih.govhttps://pubmed.ncbi.nlm.nih.gov/14530445/ https://ncbi.nlm.nih.govhttps://doi.org/10.1093/nar/gkg802
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